IL_7D6Z_063

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7D6Z|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D6Z_063 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0917

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7D6Z|1|A|C|1686
7D6Z|1|A|G|1687
7D6Z|1|A|U|1688
7D6Z|1|A|A|1689
7D6Z|1|A|A|1690
7D6Z|1|A|C|1691
*
7D6Z|1|A|G|1696
7D6Z|1|A|G|1697
7D6Z|1|A|A|1698
7D6Z|1|A|G|1699
7D6Z|1|A|A|1700
7D6Z|1|A|A|1701
7D6Z|1|A|G|1702

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain f

Small subunit ribosomal RNA; SSU rRNA