IL_7D6Z_180

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUGUGUAGGAUAGGUGG*CCACCCUU

Length

25 nucleotides

Bulged bases

7D6Z|1|A|G|2110, 7D6Z|1|A|U|2111, 7D6Z|1|A|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|A|A|2108
7D6Z|1|A|U|2109
7D6Z|1|A|G|2110
7D6Z|1|A|U|2111
7D6Z|1|A|G|2112
7D6Z|1|A|U|2113
7D6Z|1|A|A|2114
7D6Z|1|A|G|2115
7D6Z|1|A|G|2116
7D6Z|1|A|A|2117
7D6Z|1|A|U|2118
7D6Z|1|A|A|2119
7D6Z|1|A|G|2120
7D6Z|1|A|G|2121
7D6Z|1|A|U|2122
7D6Z|1|A|G|2123
7D6Z|1|A|G|2124
*
7D6Z|1|A|C|2174
7D6Z|1|A|C|2175
7D6Z|1|A|A|2176
7D6Z|1|A|C|2177
7D6Z|1|A|C|2178
7D6Z|1|A|C|2179
7D6Z|1|A|U|2180
7D6Z|1|A|U|2181

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA