IL_7D6Z_181

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUAC

Length

33 nucleotides

Bulged bases

7D6Z|1|A|G|2125, 7D6Z|1|A|U|2132, 7D6Z|1|A|C|2164, 7D6Z|1|A|G|2168, 7D6Z|1|A|A|2169, 7D6Z|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|A|G|2124
7D6Z|1|A|G|2125
7D6Z|1|A|A|2126
7D6Z|1|A|G|2127
7D6Z|1|A|G|2128
7D6Z|1|A|C|2129
7D6Z|1|A|U|2130
7D6Z|1|A|U|2131
7D6Z|1|A|U|2132
7D6Z|1|A|G|2133
7D6Z|1|A|A|2134
7D6Z|1|A|A|2135
7D6Z|1|A|G|2136
*
7D6Z|1|A|U|2155
7D6Z|1|A|G|2156
7D6Z|1|A|G|2157
7D6Z|1|A|A|2158
7D6Z|1|A|G|2159
7D6Z|1|A|C|2160
7D6Z|1|A|C|2161
7D6Z|1|A|G|2162
7D6Z|1|A|A|2163
7D6Z|1|A|C|2164
7D6Z|1|A|C|2165
7D6Z|1|A|U|2166
7D6Z|1|A|U|2167
7D6Z|1|A|G|2168
7D6Z|1|A|A|2169
7D6Z|1|A|A|2170
7D6Z|1|A|A|2171
7D6Z|1|A|U|2172
7D6Z|1|A|A|2173
7D6Z|1|A|C|2174

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA