IL_7D7V_001

3D structure

PDB id

7D7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) and U1A protein

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AACAUCCCCG*CU

Length

12 nucleotides

Bulged bases

7D7V|1|A|U|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04650.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-L-cSH

Number of instances in this motif group

4

Unit IDs

7D7V|1|A|A|6
7D7V|1|A|A|7
7D7V|1|A|C|8
7D7V|1|A|A|9
7D7V|1|A|U|10
7D7V|1|A|C|11
7D7V|1|A|C|12
7D7V|1|A|C|13
7D7V|1|A|C|14
7D7V|1|A|G|15
*
7D7V|1|A|C|52
7D7V|1|A|U|53

Current chains

Chain A

17delU1A (58-MER)

Nearby chains