IL_7D7Y_002

3D structure

PDB id

7D7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Domain1 of NAD+ Riboswitch with adenosine triphosphate (ATP)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GG*CGC

Length

5 nucleotides

Bulged bases

7D7Y|1|A|G|38

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D7Y_002 not in the Motif Atlas

Geometric match to IL_7D7W_002

Geometric discrepancy: 0.0514

The information below is about IL_7D7W_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

7D7Y|1|A|G|22
7D7Y|1|A|G|23
*
7D7Y|1|A|C|37
7D7Y|1|A|G|38
7D7Y|1|A|C|39

Current chains

Chain A

18GAAA (52-MER)

Nearby chains