IL_7D82_001

3D structure

PDB id

7D82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Domain2 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+), soaked in Mn2+

Experimental method

X-RAY DIFFRACTION

Resolution

2.489 Å

Loop

Sequence

AACAUCCCCG*CU

Length

12 nucleotides

Bulged bases

7D82|1|A|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7D82_001 not in the Motif Atlas

Homologous match to IL_7D81_001

Geometric discrepancy: 0.0819

The information below is about IL_7D81_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04650.4

Basepair signature

cWW-cSH-cWW-L-L-R-L-R-L

Number of instances in this motif group

4

Unit IDs

7D82|1|A|A|7
7D82|1|A|A|8
7D82|1|A|C|9
7D82|1|A|A|10
7D82|1|A|U|11
7D82|1|A|C|12
7D82|1|A|C|13
7D82|1|A|C|14
7D82|1|A|C|15
7D82|1|A|G|16
*
7D82|1|A|C|43
7D82|1|A|U|44

Current chains

Chain A

832GAAA (50-MER)

Nearby chains