IL_7DUG_018

3D structure

PDB id

7DUG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUG_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.0953

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7DUG|1|A|G|446
7DUG|1|A|G|447
7DUG|1|A|A|448
7DUG|1|A|C|449
7DUG|1|A|G|450
*
7DUG|1|A|C|483
7DUG|1|A|G|484
7DUG|1|A|G|485
7DUG|1|A|U|486
7DUG|1|A|A|487
7DUG|1|A|C|488

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain P

30S ribosomal protein S16