IL_7DUG_039

3D structure

PDB id

7DUG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUG_039 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.1367

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7DUG|1|A|G|993
7DUG|1|A|A|994
7DUG|1|A|C|995
7DUG|1|A|A|996
7DUG|1|A|U|997
*
7DUG|1|A|A|1044
7DUG|1|A|C|1045

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z