IL_7DUG_041

3D structure

PDB id

7DUG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7DUG|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUG_041 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.118

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7DUG|1|A|G|1048
7DUG|1|A|U|1049
7DUG|1|A|G|1050
*
7DUG|1|A|C|1208
7DUG|1|A|C|1209

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z