IL_7DUG_055
3D structure
- PDB id
- 7DUG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 7DUG|1|A|A|1492, 7DUG|1|A|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DUG_055 not in the Motif Atlas
- Homologous match to IL_4LFB_058
- Geometric discrepancy: 0.1638
- The information below is about IL_4LFB_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7DUG|1|A|G|1405
7DUG|1|A|U|1406
7DUG|1|A|5MC|1407
7DUG|1|A|A|1408
7DUG|1|A|C|1409
*
7DUG|1|A|G|1491
7DUG|1|A|A|1492
7DUG|1|A|A|1493
7DUG|1|A|G|1494
7DUG|1|A|U|1495
7DUG|1|A|C|1496
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain W
- RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')
- Chain Y
- RNA (5'-R(UPUPUPUPUPU)-3')
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