IL_7DUG_064

3D structure

PDB id

7DUG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

AGGGAACCCG*UGGGGUGCCCCGCGAGGGGAGCCCU

Length

35 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUG|1|A|A|1001
7DUG|1|A|G|1002
7DUG|1|A|G|1003
7DUG|1|A|G|1003|||A
7DUG|1|A|A|1004
7DUG|1|A|A|1005
7DUG|1|A|C|1006
7DUG|1|A|C|1007
7DUG|1|A|C|1008
7DUG|1|A|G|1009
*
7DUG|1|A|U|1020
7DUG|1|A|G|1021
7DUG|1|A|G|1022
7DUG|1|A|G|1023
7DUG|1|A|G|1024
7DUG|1|A|U|1025
7DUG|1|A|G|1026
7DUG|1|A|C|1027
7DUG|1|A|C|1028
7DUG|1|A|C|1029
7DUG|1|A|C|1030
7DUG|1|A|G|1030|||A
7DUG|1|A|C|1030|||B
7DUG|1|A|G|1030|||C
7DUG|1|A|A|1030|||D
7DUG|1|A|G|1031
7DUG|1|A|G|1032
7DUG|1|A|G|1033
7DUG|1|A|G|1034
7DUG|1|A|A|1035
7DUG|1|A|G|1036
7DUG|1|A|C|1037
7DUG|1|A|C|1038
7DUG|1|A|C|1039
7DUG|1|A|U|1040

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains