IL_7DUH_014

3D structure

PDB id

7DUH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

7DUH|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUH_014 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.1056

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

7DUH|1|A|U|367
7DUH|1|A|U|368
7DUH|1|A|C|369
*
7DUH|1|A|G|392
7DUH|1|A|A|393

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16