IL_7DUH_029
3D structure
- PDB id
- 7DUH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- GGAGAG*UGGUC
- Length
- 11 nucleotides
- Bulged bases
- 7DUH|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DUH_029 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3705
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
7DUH|1|A|G|661
7DUH|1|A|G|662
7DUH|1|A|A|663
7DUH|1|A|G|664
7DUH|1|A|A|665
7DUH|1|A|G|666
*
7DUH|1|A|U|740
7DUH|1|A|G|741
7DUH|1|A|G|742
7DUH|1|A|U|743
7DUH|1|A|C|744
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S6
- Chain O
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S18
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