IL_7DUH_065

3D structure

PDB id

7DUH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CCGCA*UUCCCGG

Length

12 nucleotides

Bulged bases

7DUH|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUH|1|A|C|931
7DUH|1|A|C|932
7DUH|1|A|G|933
7DUH|1|A|C|934
7DUH|1|A|A|935
*
7DUH|1|A|U|1380
7DUH|1|A|U|1381
7DUH|1|A|C|1382
7DUH|1|A|C|1383
7DUH|1|A|C|1384
7DUH|1|A|G|1385
7DUH|1|A|G|1386

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9