IL_7DUJ_017
3D structure
- PDB id
- 7DUJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- 7DUJ|1|A|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DUJ_017 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.1489
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
7DUJ|1|A|G|409
7DUJ|1|A|G|410
7DUJ|1|A|A|411
7DUJ|1|A|A|412
7DUJ|1|A|G|413
7DUJ|1|A|A|414
7DUJ|1|A|A|415
7DUJ|1|A|G|416
*
7DUJ|1|A|U|427
7DUJ|1|A|G|428
7DUJ|1|A|U|429
7DUJ|1|A|A|430
7DUJ|1|A|A|431
7DUJ|1|A|A|432
7DUJ|1|A|C|433
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
Coloring options: