IL_7DUJ_033

3D structure

PDB id

7DUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUJ_033 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0908

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7DUJ|1|A|C|779
7DUJ|1|A|A|780
7DUJ|1|A|A|781
7DUJ|1|A|A|782
7DUJ|1|A|C|783
*
7DUJ|1|A|G|799
7DUJ|1|A|G|800
7DUJ|1|A|U|801
7DUJ|1|A|A|802
7DUJ|1|A|G|803

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain K

30S ribosomal protein S11