IL_7DUJ_061

3D structure

PDB id

7DUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

7DUJ|1|A|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUJ_061 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.1794

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7DUJ|1|A|U|375
7DUJ|1|A|G|376
7DUJ|1|A|G|377
*
7DUJ|1|A|C|386
7DUJ|1|A|U|387
7DUJ|1|A|G|388
7DUJ|1|A|A|389

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16