IL_7DUK_061

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AGUUGCCAGCG*CGGGCACUCU

Length

21 nucleotides

Bulged bases

7DUK|1|A|U|1125, 7DUK|1|A|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUK|1|A|A|1123
7DUK|1|A|G|1124
7DUK|1|A|U|1125
7DUK|1|A|U|1126
7DUK|1|A|G|1127
7DUK|1|A|C|1128
7DUK|1|A|C|1129
7DUK|1|A|A|1130
7DUK|1|A|G|1131
7DUK|1|A|C|1132
7DUK|1|A|G|1133
*
7DUK|1|A|C|1141
7DUK|1|A|G|1142
7DUK|1|A|G|1143
7DUK|1|A|G|1144
7DUK|1|A|C|1145
7DUK|1|A|A|1146
7DUK|1|A|C|1147
7DUK|1|A|U|1148
7DUK|1|A|C|1149
7DUK|1|A|U|1150

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10