IL_7DUL_050

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7DUL_050 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2509

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7DUL|1|A|C|1259
7DUL|1|A|C|1260
7DUL|1|A|A|1261
7DUL|1|A|C|1262
*
7DUL|1|A|G|1273
7DUL|1|A|G|1274
7DUL|1|A|A|1275
7DUL|1|A|G|1276

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain U

30S ribosomal protein Thx