IL_7DUL_053
3D structure
- PDB id
- 7DUL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.62 Å
Loop
- Sequence
- G(4OC)C(5MC)G*CG(UR3)AAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, 5MC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DUL_053 not in the Motif Atlas
- Homologous match to IL_4LFB_057
- Geometric discrepancy: 0.0978
- The information below is about IL_4LFB_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7DUL|1|A|G|1401
7DUL|1|A|4OC|1402
7DUL|1|A|C|1403
7DUL|1|A|5MC|1404
7DUL|1|A|G|1405
*
7DUL|1|A|C|1496
7DUL|1|A|G|1497
7DUL|1|A|UR3|1498
7DUL|1|A|A|1499
7DUL|1|A|A|1500
7DUL|1|A|C|1501
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain Y
- RNA (5'-R(*UP*UP*UP*UP*UP*U)-3')
Coloring options: