IL_7DVQ_007
3D structure
- PDB id
- 7DVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UAU*AAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7DVQ_007 not in the Motif Atlas
- Geometric match to IL_3R1E_001
- Geometric discrepancy: 0.1113
- The information below is about IL_3R1E_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
7DVQ|1|G|U|195
7DVQ|1|G|A|196
7DVQ|1|G|U|197
*
7DVQ|1|H|A|24
7DVQ|1|H|A|25
7DVQ|1|H|A|26
Current chains
- Chain G
- pre-mRNA
- Chain H
- U12 snRNA
Nearby chains
- Chain 1
- Splicing factor 3B subunit 1
- Chain 2
- Splicing factor 3B subunit 2
- Chain L
- Cell division cycle 5-like protein
- Chain v
- Sodium channel modifier 1
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