IL_7EFI_003

3D structure

PDB id

7EFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

(OMG)(OMG)GAG*CGAAGAAC

Length

13 nucleotides

Bulged bases

7EFI|1|A|A|6||||9_769

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7EFI_003 not in the Motif Atlas

Geometric match to IL_7EFG_001

Geometric discrepancy: 0.1117

The information below is about IL_7EFG_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.7

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

7EFI|1|A|OMG|13
7EFI|1|A|OMG|14
7EFI|1|A|DG|15
7EFI|1|A|DA|16
7EFI|1|A|G|17
*
7EFI|1|A|C|3||||9_769
7EFI|1|A|G|4||||9_769
7EFI|1|A|A|5||||9_769
7EFI|1|A|A|6||||9_769
7EFI|1|A|G|7||||9_769
7EFI|1|A|A|8||||9_769
7EFI|1|A|A|9||||9_769
7EFI|1|A|C|10||||9_769

Current chains

Chain A

DNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3')

Nearby chains