IL_7ELQ_003

3D structure

PDB id

7ELQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of xanthine riboswitch with xanthine, manganese saok

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AGAAGCGU*AAUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ELQ_003 not in the Motif Atlas

Homologous match to IL_7ELQ_001

Geometric discrepancy: 0.1038

The information below is about IL_7ELQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24499.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L-cSH-L

Number of instances in this motif group

1

Unit IDs

7ELQ|1|B|A|6||||1_657
7ELQ|1|B|G|7||||1_657
7ELQ|1|B|A|8||||1_657
7ELQ|1|B|A|9||||1_657
7ELQ|1|B|G|10||||1_657
7ELQ|1|B|C|11||||1_657
7ELQ|1|B|G|12||||1_657
7ELQ|1|B|U|13||||1_657
*
7ELQ|1|B|A|38||||1_657
7ELQ|1|B|A|39||||1_657
7ELQ|1|B|U|40||||1_657
7ELQ|1|B|U|41||||1_657

Current chains

Chain B

NMT1_Mn (46-MER)

Nearby chains