IL_7F5S_009

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_009 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2483

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7F5S|1|L5|C|129
7F5S|1|L5|C|130
7F5S|1|L5|C|131
*
7F5S|1|L5|G|138
7F5S|1|L5|G|139

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35