IL_7F5S_014

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCGUGG*CG

Length

8 nucleotides

Bulged bases

7F5S|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_014 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1574

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

7F5S|1|L5|U|184
7F5S|1|L5|C|185
7F5S|1|L5|G|186
7F5S|1|L5|U|187
7F5S|1|L5|G|188
7F5S|1|L5|G|189
*
7F5S|1|L5|C|252
7F5S|1|L5|G|253

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain LY

60S ribosomal protein L26

Chain Lj

60S ribosomal protein L37