IL_7F5S_044

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

7F5S|1|L5|C|1214, 7F5S|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_044 not in the Motif Atlas

Geometric match to IL_5ZTM_001

Geometric discrepancy: 0.3313

The information below is about IL_5ZTM_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7F5S|1|L5|C|1082
7F5S|1|L5|U|1083
7F5S|1|L5|C|1084
*
7F5S|1|L5|G|1213
7F5S|1|L5|C|1214
7F5S|1|L5|C|1215
7F5S|1|L5|C|1216
7F5S|1|L5|G|1217

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29