3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
CGCCCGAU*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7F5S_072 not in the Motif Atlas
Geometric match to IL_7RQB_037
Geometric discrepancy: 0.12
The information below is about IL_7RQB_037
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_15861.7
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
12

Unit IDs

7F5S|1|L5|C|1911
7F5S|1|L5|G|1912
7F5S|1|L5|C|1913
7F5S|1|L5|C|1914
7F5S|1|L5|C|1915
7F5S|1|L5|G|1916
7F5S|1|L5|A|1917
7F5S|1|L5|U|1918
*
7F5S|1|L5|G|2064
7F5S|1|L5|G|2065

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LF
60S ribosomal protein L7
Chain LO
60S ribosomal protein L13a
Chain LS
60S ribosomal protein L18a
Chain Lf
60S ribosomal protein L35a

Coloring options:


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