IL_7F5S_107

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AUC*G(A2M)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_107 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.16

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7F5S|1|L5|A|3630
7F5S|1|L5|U|3631
7F5S|1|L5|C|3632
*
7F5S|1|L5|G|3829
7F5S|1|L5|A2M|3830
7F5S|1|L5|U|3831

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41