3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
CCUCGGAUAG*U(OMG)C(2MG)GAGUG
Length
19 nucleotides
Bulged bases
7F5S|1|L5|C|4757, 7F5S|1|L5|U|4758, 7F5S|1|L5|A|4764, 7F5S|1|L5|C|4871, 7F5S|1|L5|G|4873, 7F5S|1|L5|A|4874, 7F5S|1|L5|U|4876
QA status
Modified nucleotides: OMG, 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7F5S|1|L5|C|4756
7F5S|1|L5|C|4757
7F5S|1|L5|U|4758
7F5S|1|L5|C|4759
7F5S|1|L5|G|4760
7F5S|1|L5|G|4761
7F5S|1|L5|A|4762
7F5S|1|L5|U|4763
7F5S|1|L5|A|4764
7F5S|1|L5|G|4765
*
7F5S|1|L5|U|4869
7F5S|1|L5|OMG|4870
7F5S|1|L5|C|4871
7F5S|1|L5|2MG|4872
7F5S|1|L5|G|4873
7F5S|1|L5|A|4874
7F5S|1|L5|G|4875
7F5S|1|L5|U|4876
7F5S|1|L5|G|4877

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LE
60S ribosomal protein L6
Chain LH
60S ribosomal protein L9
Chain LM
60S ribosomal protein L14
Chain LO
60S ribosomal protein L13a
Chain LS
60S ribosomal protein L18a

Coloring options:

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