IL_7F5S_171

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7F5S_171 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.1637

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7F5S|1|L5|A|5014
7F5S|1|L5|G|5015
7F5S|1|L5|A|5016
7F5S|1|L5|G|5017
*
7F5S|1|L5|C|5032
7F5S|1|L5|G|5033
7F5S|1|L5|A|5034
7F5S|1|L5|U|5035

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19