IL_7JNH_003

3D structure

PDB id

7JNH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a double-ENE RNA stability element in complex with a 28-mer poly(A) RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

7JNH|1|B|A|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7JNH|1|B|G|35
7JNH|1|B|G|36
*
7JNH|1|B|U|55
7JNH|1|B|A|56
7JNH|1|B|C|57

Current chains

Chain B

Core double ENE RNA (Xtal construct) from Oryza sativa transposon,Core double ENE RNA (Xtal construct) from Oryza sativa transposon

Nearby chains

Chain A

28-mer poly(A) RNA