IL_7JQC_003
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 7JQC|1|A|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7JQC_003 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3617
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
7JQC|1|A|C|37
7JQC|1|A|A|38
7JQC|1|A|A|39
7JQC|1|A|A|40
*
7JQC|1|A|U|514
7JQC|1|A|G|515
7JQC|1|A|A|516
7JQC|1|A|C|517
7JQC|1|A|G|518
Current chains
- Chain A
- rRNA
Nearby chains
- Chain K
- uS4
- Chain M
- 40S ribosomal protein S4
- Chain Z
- 40S ribosomal protein S24
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