IL_7JQC_008

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_008 not in the Motif Atlas

Geometric match to IL_1ZX7_004

Geometric discrepancy: 0.1479

The information below is about IL_1ZX7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7JQC|1|A|G|108
7JQC|1|A|U|109
7JQC|1|A|U|110
*
7JQC|1|A|G|351
7JQC|1|A|U|352
7JQC|1|A|C|353

Current chains

Chain A

rRNA

Nearby chains

Chain J

eS8

Chain M

40S ribosomal protein S4

Chain O

uS17