IL_7JQC_012

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUU*AUGCCGAC

Length

13 nucleotides

Bulged bases

7JQC|1|A|C|142, 7JQC|1|A|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|G|130
7JQC|1|A|A|141
7JQC|1|A|C|142
7JQC|1|A|U|143
7JQC|1|A|U|144
*
7JQC|1|A|A|175
7JQC|1|A|U|176
7JQC|1|A|G|177
7JQC|1|A|C|178
7JQC|1|A|C|179
7JQC|1|A|G|180
7JQC|1|A|A|181
7JQC|1|A|C|182

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6