IL_7JQC_015

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_015 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.2267

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7JQC|1|A|C|188
7JQC|1|A|U|189
7JQC|1|A|G|190
7JQC|1|A|A|191
7JQC|1|A|C|192
*
7JQC|1|A|G|207
7JQC|1|A|G|208
7JQC|1|A|A|209
7JQC|1|A|U|210
7JQC|1|A|G|211

Current chains

Chain A

rRNA

Nearby chains

Chain J

eS8