IL_7JQC_017

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|C|223
7JQC|1|A|A|224
7JQC|1|A|G|225
7JQC|1|A|U|287
7JQC|1|A|G|288
*
7JQC|1|A|C|295
7JQC|1|A|U|296
7JQC|1|A|A|297
7JQC|1|A|G|298

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6

Chain J

eS8

Chain M

40S ribosomal protein S4

Chain O

uS17