IL_7JQC_018

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

7JQC|1|A|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_018 not in the Motif Atlas

Homologous match to IL_4V88_399

Geometric discrepancy: 0.1959

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7JQC|1|A|G|312
7JQC|1|A|A|313
7JQC|1|A|U|314
*
7JQC|1|A|A|336
7JQC|1|A|C|337

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6

Chain M

40S ribosomal protein S4