IL_7JQC_030

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CGAGGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_030 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.2129

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7JQC|1|A|G|563
7JQC|1|A|A|564
7JQC|1|A|G|565
*
7JQC|1|A|C|585
7JQC|1|A|G|586
7JQC|1|A|A|587
7JQC|1|A|G|588
7JQC|1|A|G|589
7JQC|1|A|A|590
7JQC|1|A|U|591
7JQC|1|A|C|592

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain f

eS30