IL_7JQC_032

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

7JQC|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|A|599
7JQC|1|A|G|600
7JQC|1|A|G|601
7JQC|1|A|G|602
7JQC|1|A|C|603
7JQC|1|A|A|604
7JQC|1|A|A|605
7JQC|1|A|G|606
7JQC|1|A|U|607
7JQC|1|A|C|608
*
7JQC|1|A|G|635
7JQC|1|A|C|636
7JQC|1|A|U|637

Current chains

Chain A

rRNA

Nearby chains

Chain D

uS5

Chain E

Ribosomal protein S3

Chain F

Nsp1

Chain K

uS4

Chain f

eS30