IL_7JQC_040

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|G|807
7JQC|1|A|A|808
7JQC|1|A|A|809
7JQC|1|A|A|810
7JQC|1|A|A|811
7JQC|1|A|A|812
7JQC|1|A|A|813
7JQC|1|A|U|814
7JQC|1|A|U|815
7JQC|1|A|A|816
*
7JQC|1|A|U|848
7JQC|1|A|A|849
7JQC|1|A|C|850
7JQC|1|A|C|851
7JQC|1|A|G|852
7JQC|1|A|C|853
7JQC|1|A|A|854
7JQC|1|A|G|855
7JQC|1|A|C|856

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain M

40S ribosomal protein S4

Chain O

uS17

Chain Y

uS8