IL_7JQC_056

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGA*UACA

Length

7 nucleotides

Bulged bases

7JQC|1|A|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_056 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.3089

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7JQC|1|A|U|1202
7JQC|1|A|G|1203
7JQC|1|A|A|1204
*
7JQC|1|A|U|1694
7JQC|1|A|A|1695
7JQC|1|A|C|1696
7JQC|1|A|A|1697

Current chains

Chain A

rRNA

Nearby chains

Chain D

uS5

Chain b

40S ribosomal protein S26