IL_7JQC_058

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_058 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.2084

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

7JQC|1|A|C|1267
7JQC|1|A|C|1268
*
7JQC|1|A|G|1514
7JQC|1|A|G|1515
7JQC|1|A|G|1516

Current chains

Chain A

rRNA

Nearby chains

Chain L

S10_plectin domain-containing protein

Chain Q

uS19

Chain T

uS13

Chain g

eS31