IL_7JQC_075

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UACC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_075 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2352

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

7JQC|1|A|U|1714
7JQC|1|A|A|1715
7JQC|1|A|C|1716
7JQC|1|A|C|1717
*
7JQC|1|A|G|1816
7JQC|1|A|G|1817
7JQC|1|A|A|1818
7JQC|1|A|A|1819

Current chains

Chain A

rRNA

Nearby chains

Chain c

Uncharacterized protein