IL_7JQC_076

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_076 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.1654

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

7JQC|1|A|C|1717
7JQC|1|A|G|1718
7JQC|1|A|A|1719
7JQC|1|A|U|1720
*
7JQC|1|A|A|1813
7JQC|1|A|G|1814
7JQC|1|A|A|1815
7JQC|1|A|G|1816

Current chains

Chain A

rRNA

Nearby chains

Chain c

Uncharacterized protein