IL_7JQC_084

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUGCCUAG*CAAUAUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|i|G|6130
7JQC|1|i|A|6131
7JQC|1|i|U|6132
7JQC|1|i|G|6133
7JQC|1|i|C|6134
7JQC|1|i|C|6135
7JQC|1|i|U|6136
7JQC|1|i|A|6137
7JQC|1|i|G|6138
*
7JQC|1|i|C|6150
7JQC|1|i|A|6151
7JQC|1|i|A|6152
7JQC|1|i|U|6153
7JQC|1|i|A|6154
7JQC|1|i|U|6155
7JQC|1|i|C|6156

Current chains

Chain i

Cricket paralysis virus IRES RNA

Nearby chains

Chain G

uS7