IL_7JQC_086

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UACGCAC*GUGAAA

Length

13 nucleotides

Bulged bases

7JQC|1|A|C|65, 7JQC|1|A|C|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_086 not in the Motif Atlas

Geometric match to IL_1M5K_001

Geometric discrepancy: 0.2883

The information below is about IL_1M5K_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47352.2

Basepair signature

cWW-cWW-tSH-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7JQC|1|A|U|63
7JQC|1|A|A|64
7JQC|1|A|C|65
7JQC|1|A|G|66
7JQC|1|A|C|67
7JQC|1|A|A|68
7JQC|1|A|C|69
*
7JQC|1|A|G|80
7JQC|1|A|U|81
7JQC|1|A|G|82
7JQC|1|A|A|83
7JQC|1|A|A|84
7JQC|1|A|A|85

Current chains

Chain A

rRNA

Nearby chains

Chain H

eS6

Chain Z

40S ribosomal protein S24