IL_7JQC_095

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACCAC*GUCCCUG

Length

13 nucleotides

Bulged bases

7JQC|1|A|C|1215, 7JQC|1|A|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|C|1213
7JQC|1|A|A|1214
7JQC|1|A|C|1215
7JQC|1|A|C|1216
7JQC|1|A|A|1217
7JQC|1|A|C|1218
*
7JQC|1|A|G|1680
7JQC|1|A|U|1681
7JQC|1|A|C|1682
7JQC|1|A|C|1683
7JQC|1|A|C|1684
7JQC|1|A|U|1685
7JQC|1|A|G|1686

Current chains

Chain A

rRNA

Nearby chains

Chain G

uS7

Chain R

Uncharacterized protein

Chain V

uS10

Chain b

40S ribosomal protein S26

Chain d

eS28