IL_7JQC_100

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

7JQC|1|A|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQC_100 not in the Motif Atlas

Homologous match to IL_8P9A_398

Geometric discrepancy: 0.1311

The information below is about IL_8P9A_398

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

7JQC|1|A|U|495
7JQC|1|A|C|496
*
7JQC|1|A|G|506
7JQC|1|A|G|507
7JQC|1|A|A|508

Current chains

Chain A

rRNA

Nearby chains

Chain K

uS4

Chain M

40S ribosomal protein S4

Chain Z

40S ribosomal protein S24