IL_7JQL_042

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7JQL|1|1A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_042 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2023

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

7JQL|1|1A|G|1087
7JQL|1|1A|A|1088
7JQL|1|1A|G|1089
7JQL|1|1A|U|1090
7JQL|1|1A|G|1091
*
7JQL|1|1A|C|1100
7JQL|1|1A|U|1101
7JQL|1|1A|C|1102

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36