IL_7JQL_062

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7JQL_062 not in the Motif Atlas

Homologous match to IL_7RQB_064

Geometric discrepancy: 0.0649

The information below is about IL_7RQB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.2

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7JQL|1|1A|G|1651
7JQL|1|1A|A|1652
7JQL|1|1A|G|1653
7JQL|1|1A|A|1654
7JQL|1|1A|A|1655
7JQL|1|1A|C|1656
*
7JQL|1|1A|G|2004
7JQL|1|1A|A|2005
7JQL|1|1A|C|2006

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17